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chapterbib and bibunits are two
LaTeX packages which produce multiple bibliographies in a
document. This is no problem for RefTeX as long as all
bibliographies use the same BibTeX database files. If they do
not, it is best to have each document part in a separate file (as
it is required for chapterbib anyway). Then RefTeX
will still scan the locally relevant databases correctly. If you
have multiple bibliographies within a single file, this
may or may not be the case.